Pauling was a model builder. He solved molecular structures best when he could see
and touch what he was thinking about. So as he was considering how atoms might join
together into proteins, he made models, piecing them together in his garage out of
wood, wire, paper, pieces of metal, whatever was handy.
In his hands, it could be a powerful technique. Take keratin as an example. Pauling
decided after talking with Astbury that keratin was too large, too complex to solve
directly from the analysis of x-ray crystallography images. There were too many atoms
reflecting x-rays, there was too much data, the images were too fuzzy. In the days
before computers, there was no fast way to crunch all the necessary numbers (data
analysis was done by hand, by dedicated personnel in the laboratory. Completely solving
simple structures could take weeks or months; molecules as large as keratin defied
this sort of analysis). Pauling preferred his own approach: Learn everything possible
about the sizes and shapes of the component pieces (amino acids in this case), make
reasonable chemical assumptions about the bonds that hold them together, use that
information to build models, then see if the model's shape was likely to fit the available
x-ray data. It turned Astbury's approach on its head, ending up with the x-ray pattern
instead of starting with it.
In the late summer of 1937, Pauling tried his model-building approach on keratin.
He did not have precise information on the structure of amino acids – no one did,
the work had not yet been done – but he did have a sense of the general size of amino
acids, a strong belief in Fischer's ideas about peptide bonds and long chains, and
some preliminary information on amino acids. His own knowledge of chemical bonds convinced
him that peptide bonds would have considerable double-bond character, which meant
that the atoms on either side would be held in the same plane. That was a potentially
important insight (if it turned out to be correct) but it was basically all he had
in the way of a new insight as he puzzled for weeks over the structure of keratin.
He considered, he imagined, he made models, and he found that none of them worked.
So he thought some more. He found that he could not make Astbury's kinked-ribbon idea
into a reasonable model, one that fit his ideas about the peptide bond, included hydrogen
bonds, and matched the x-ray patterns. He tried some ideas that wound the chain around
into a three-dimensional structure; these did not work either. Astbury's studies strongly
indicated some sort of repeating structure in keratin every 5.1 angstroms. Nothing
Pauling built could explain that repeat.
By September, Pauling was ready to give up. Something was not right. Maybe he was
wrong about the nature of the peptide bond. Maybe there was something in the structure
of amino acids that he did not understand. Maybe his hydrogen bonding ideas were off
the mark.
The only way to eliminate the maybes was to go back to basics, start with the building
blocks, focus on amino acids and nail down their structures precisely. That was the
first step. Next would come close studies of the peptide bond. This was going to be
a major project. Amino acids were not giant molecules, but they were bigger than any
organic molecule that had yet been solved with x-ray crystallography. To attack their
structures, Pauling would need to staff up his laboratory. In particular, he needed
a skilled, steady assistant who knew how to produce and interpret x-ray pictures of
proteins.
He found what he needed in the thin, crooked form of Robert Corey.
|